Lauren Coombe
Lauren Coombe
Hi again @pdimens, I added an option `prefix` in PR #172 - would you be willing to try it out to see if it works for you? You wouldn't need...
Awesome! I'll do a new release integrating that change this week :)
I just released v1.2.8 which includes this new option! It should be updated on conda in the next day or so.
That's great to hear! :D
Hi @YingChen94, How much memory do you have available on your machine? And, what is the memory usage listed in the `CF8.k40-w32.n100-5000.physlr.tsv.gz.time` file from the failed step? Error 137 generally...
@aafshinfard - Do you have any guidelines for the expected memory usage, and any suggestions for reducing the memory of this step?
Hi @V-JJ, 1. When deciding on what to supply for the reference, either option is totally fine (and probably depends a bit upon what you're hoping to achieve) - but...
Hi @ideshigenomics, Just to add to Rene’s response - there are default minimums for the synteny block length (`--length`) and the contig length (`--seq_length`) that will be plotted, which you...
Hi @sosie101, If the *.tsv files are the same (ie. the final synteny block coordinates), yes your installation is fine. The dot files could differ just due to the order...
Hi Theo, Yes, how overlaps themselves are detected in ntLink and ntJoin differ, since they use different input data, but how the overlaps are resolved is very similar under the...