laijen000

treeplot not working

1

Hello, treeplot used to work fine for me (R v4.1) but now it is giving me this error. Could you help? ERROR while rich displaying an object: Error in `geom_segment2()`:...

netVisual_heatmap for comparison of a single pathway

1

Hi @sqjin, Thank you for this helpful tool! When I try to plot netVisual_heatmap(mergedcellchat, comparison=c(1,2), signaling='pathway', measure='count'), the heatmap looks identical to netVisual_heatmap(mergedcellchat, comparison=c(1,2), measure='count'). It does not update for...

How is fold difference calculated?

1

Hello, Thank you for this tool! For the R version, I was wondering if fold difference is "sample 2 / sample 1" or "sample 1/ sample 2"? Thank you