netVisual_heatmap for comparison of a single pathway

[laijen000]

Hi @sqjin,

Thank you for this helpful tool! When I try to plot netVisual_heatmap(mergedcellchat, comparison=c(1,2), signaling='pathway', measure='count'), the heatmap looks identical to netVisual_heatmap(mergedcellchat, comparison=c(1,2), measure='count'). It does not update for specific signaling pathways. Do you have advice on how to fix this? Thank you!

[sqjin]

@laijen000 It seems that you use it in a wrong way. Here is an example: pathway = "WNT"; netVisual_heatmap(mergedcellchat, comparison=c(1,2), signaling= pathway, measure='count')