laijen000

Hi @cutleraging @GuangchuangYu , I am having the same issue. Did you find a solution? Thank you!

Hi all! I am getting the same IndexError with version 0.13.1 and I ran with the command --report. Has this issue been resolved? Or am I unable to run with...

Hi @Lesdormis , I am having the exact same issue. I tried using method="ICA" for reduceDimension() followed by setting num_path=1 for orderCells(), but keep getting the same trajectory with multiple...

Hi @mistrm82 , I have been using MACS2 to call chipseq peaks with a lenient pvalue 0.1 on true replicates, then using IDR as instructed in the HBC tutorial. However,...

hi @JessicaChevallier @sqjin , my heatmaps are still not on the same scale despite using the latest cellchat v2 and updating my objects. could you elaborate on how you got...

Hi @beemilmlo , @akdess, I have the same question, and was wondering if you found a solution to this. I also have scRNA-seq data from controls and disease individuals, and...

Hi @GBeattie , I am having a similar issue with some pathways of interest dropping out and I've been checking intermediate steps as well. Did you find a solution to...

Hi @teng-gao , I am getting the same error while running run_numbat() on a single sample from a single individual. run_numbat() worked fine on 4 samples so far. pileup_and_phase ran...

Hi Teng, Sorry, I mean the snp_index issue reported in this thread/subject line! The error message is the same as reported here. On Mon, Jan 9, 2023 at 8:10 AM...