Kristoffer Vitting-Seerup

Added to the to do list. Thanks for the suggestion :-)

Is there any update on how to solve this problem?

I have an R package that depends on irlba working - is there any solution on the horizon that does not require all my users to install from source?

I think the problem is more illustrated by the p-value. With the dataset I mention above the fisher.test would (in `R`code) look something like: ``` m1

Unfortunatly not 😅 man. 12. aug. 2024 kl. 17.38 skrev Olivier Feudjio ***@***.*** >: > Hello > Thank you for developing this package > I was wondering whether it was...

You have to manualet add the differential expression results - there is a description of it in the vignette but I dont have the link rigth now (on my phone)...

That is because we have already added the DGE to the switchAnalyzeRlist used in the vignette manually 😊 ________________________________ Fra: Olivier Feudjio ***@***.***> Sendt: Wednesday, August 14, 2024 5:26:02 PM...

https://www.bioconductor.org/packages/release/bioc/vignettes/IsoformSwitchAnalyzeR/inst/doc/IsoformSwitchAnalyzeR.html#adding-differential-gene-expression ________________________________ Fra: Olivier Feudjio ***@***.***> Sendt: Wednesday, August 14, 2024 7:32:50 PM Til: kvittingseerup/IsoformSwitchAnalyzeR ***@***.***> Cc: Kristoffer Vitting-Seerup ***@***.***>; Mention ***@***.***> Emne: Re: [kvittingseerup/IsoformSwitchAnalyzeR] Merge many switchAnalyzeRlist to run...

Could you try running the part2 one function at the time as shown in the vignette instead of using the part2 wrapper? tors. 1. aug. 2024 kl. 21.34 skrev ShannonTown...

The 5’ end and 3’end can be identified via the arrows in the intron that show the direction of the transcript. As default the 5’ is always plotted on the...