Kristoffer Vitting-Seerup
Kristoffer Vitting-Seerup
Although it is possible it is not a high priority since analyzing all genes is are rare usage and the majority of the runtime will be form the external analysis...
Yes and no (best answer ever!) - let me elaborate: No: the runtime of isoformSwitchTestDRIMSeq() is not increased (it still need to test all isoforms). Yes: the runtime of all...
Thanks for reaching out. It is an excellent idea to also support TxDb. I will put it on the enhancement list :) With regards to your GTF problems it sound...
I was just looking into this but txdb [seems not to import gene_names](https://support.bioconductor.org/p/94048/)? Do you know if there Is there a generalisable trick to import them as well?
Thanks for the ideas. ounds like a great idea to add gene_names to TxDB (the ensembledb package TxDB does have them so maybe one could borrow something from there?). Unfortunately...
That sounds very interesting. Gene biotype is a nice to have but not a need to have 😊 Cheers Kristoffer lør. 19. sep. 2020 kl. 19.37 skrev Lindsay Clark :...
How did Hacktoberfest go? Did you find some time to do it? And if so did you end up working on a function for IsoformSwitchAnalyzeR or an update for the...
Thanks for the effort and update - sounds really useful :-)
This looks like the error you would get if you use a wrong genome or genome version. Could you double-check that? And it is not an error that there are...
Closing due to no activity. If you respond I will open it again :)