Axel Künstner

Do you have any plans to implement the cluster_otus command as well? This is the only command I still use from the usearch pipeline. All other commands are already replaced...

@colinbrislawn: I use it for microbiome data. Actually, I have a quite smoothly running pipeline using vsearch/usearch for preprocessing and mothur for classification and Otu binning. Unfortunately, running time is...

Hi @colinbrislawn, my personal experience is that mothur usually mitigates OTU inflation well. But I have some data sets (with lots of samples sequenced) with quite a lot of very...

Hi, I would like to know whether this enhancement will be implemented soon? Thanks, Axel

@ShixiangWang Thanks! That's what I was looking for. In the past, I iterated over all samples to perform the analysis but this seems way more elegant.

@ShixiangWang One more thing. Is it possible to relate the found signatures to e.g. know COSMIC profiles?

Hi @moldach, the following lines of code should work for a singularity container ``` # fetch latest version singularity pull docker://pkrusche/hap.py # set number of threads, reference fasta file and...

Hi @slowkow do you have any plans to incorporate the resources mentioned above? Best, Axel

Thanks for your reply and thanks for the link. I'll check it out. I find your package quite handy. Maybe, I fork it and incorporate newer databases. Just a matter...

Many thanks for the quick reply. Right, the conversion is VEP only. I've forgotten that issue.