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Open slowkow opened this issue 6 years ago • 5 comments

slowkow avatar Jun 14 '18 15:06 slowkow

Hi @slowkow do you have any plans to incorporate the resources mentioned above? Best, Axel

kunstner avatar Jul 30 '20 08:07 kunstner

This is a very low priority for me. But I would be more than happy to review a pull request.

slowkow avatar Jul 30 '20 13:07 slowkow

By the way, you might consider looking for other resources.

Harmonizome seems quite promising:

Download - Google Chrome 2020-07-30_09-26-08

slowkow avatar Jul 30 '20 13:07 slowkow

Thanks for your reply and thanks for the link. I'll check it out. I find your package quite handy. Maybe, I fork it and incorporate newer databases. Just a matter of time.

kunstner avatar Jul 31 '20 05:07 kunstner

More resources... I think it would be nice to describe each of these in a neatly organized list.

https://www.bioconductor.org/packages/release/bioc/vignettes/RcisTarget/inst/doc/RcisTarget.html

https://github.com/AllenWLynch/lisa

http://dbtoolkit.cistrome.org/

https://academic.oup.com/nar/article/48/D1/D180/5608991

https://maayanlab.cloud/chea3/

http://gtrd.biouml.org/

http://homer.ucsd.edu/homer/microarray/index.html

slowkow avatar Sep 16 '20 18:09 slowkow