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Axel Künstner
> i want to know where is /opt/hap.py/bin/hap.py It is inside the singularity container. //axel
It is a path inside the singularity container. Singularity executes this binary inside the container. You just need the sif file. Everyting else is inside the sif file. Nothing to...
Yes, basically it should just perform the conversion to fastq (gzip-ed) and next sarek starts as usual. Here my outline: The basic idea would be to use spring compressed files...