isONclust
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ksahlin
De novo clustering of long transcript reads into genes
Hi I am running isONclust in a Conda environment and the spoa and medaka modules are loaded before the run. Here is my commands: ``` ml Miniconda3/4.10.3 source activate isonclust...
Thanks @ksahlin for the great tool. I've been trying to use for a variety of clustering tasks using some amplicon data. I still have some uncertainty on how it is...
Hi Kristoffer, I was wondering if it would be possible to add a `--shortname` option for isONclust to output the read name with “the read id only” instead of the...
Hi Kristoffer, I understand that each cluster generated by isONclust represents all reads that came from the same gene. However, I was looking for a de novo tool/method that could...
When I use the preferred way to install isONclust via `pip install`, I am getting version 0.0.6, however the latest release on GitHub is 0.0.4 (as of 2020-03-04). Why is...
Hi! I am working with samples from nanopore. I successfully used isOnclust on a single sample, but I would need to compare various samples. Is it possible to use isOnclust...
I was using isONclust in parallel as a previous step to define a transcriptome using ONT data with isONform. I looked at the memory profiling of isONclust and after a...
