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Hi @kpatel427 Monocle code hangs up cds

azwainCC

Hey KP, while I'm creating seuratobject using your code, cts

equbalmj

plotDendroAndColors Error

1

Hello, Thanks for your videos about WGCNA. However, I analyzed my data using the funtion plotDendroAndColors. There is an error that "Error in .plotOrderedColorSubplot(order = order, colors = colors, rowLabels...

yangjim221

Harmony issue

1

Hello Khushbu! Thank you for all the videos and the knowledge you are sharing. You are helping me a lot! I have a question about Harmony package. I was watching...

emanuelavilla

error in ordering cells step

1

Hi @kpatel427 Thanks for the code. I am running into errors in 4. ordering cells below code as it is and any other change is not solving the issue.. cds

GreyRockIQ

Hi, Thanks for your informative scripts and videos. I have a question about the Pseudobulk method. My Seurat obj doesn't have any information about the replicates. It means that each...

Zhr-Abdi

Please help with my issue with installing Cell Chat package in R studio

1

**I am unable to install Cell Chat package in R studio, even with BiocManager, Github repositories or devtools.. I am getting the following error. Please help me through this. Please...

Navya156

Hi, I am trying your variant_calling.sh for GATK pipeline. I got the error below: `A USER ERROR has occurred: Bad input: Sam file header missing Read Group fields. MarkDuplicatesSpark currently...

AnneJRomero

Can you please provide information on batch effect in bulk RNA seq

Hemantcnaik

Can you tell me how to make survival curve for two genes like p53low/mdm2high Vs p53 high/mdm2low? Thank you

sehbanamu