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Published 20 hours ago • verified publisher icon kpatel427

read groups

Open AnneJRomero opened this issue 1 year ago • 0 comments

Hi,

I am trying your variant_calling.sh for GATK pipeline.

I got the error below:

A USER ERROR has occurred: Bad input: Sam file header missing Read Group fields. MarkDuplicatesSpark currently requires reads to be labeled with read group tags, please add read groups tags to your reads

At which point do I add read groups?

Thank you

AnneJRomero avatar Dec 18 '23 10:12 AnneJRomero