knossos

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Log rotation?

1

Do we want this or is a95f9bceac790e69ccccc9ec0c730d17983cb22a enough?

Optiligence

Verbose crash-info dump

2

- Log apart, hold a much more verbose crash-info collector in memory (not hard drive), that would essentially log _everything_ - placing nodes, deleting segments, annotating volume, etc. There is...

orenshatz

Create continuous skeleton quality estimate widget

1

Can be implemented as plugin or native code. Problem: Annotators need feedback during tracing, to enforce proper and frequent node placement. The widget should display: 1) Mean inter node distance...

jmrk84

Optiligence

Tasks without task files should also be supported

1

At the moment, KNOSSOS expects only tasks with task files. It loads the empty tasks anyway, but an error is shown and the previous skeleton is not cleared. It could...

my-tien

Multiple image channels with flexible overlay functionality

1

This would be extremely useful for our machine learning pipeline. Also, it would generally dramatically widen the possibilties with KNOSSOS when it comes to other applications (e.g. light microscopy with...

jmrk84

Each node needs a render flag

7

Each node should have a simple boolean render attribute that is respected by the renderer. This would open up very powerful visualizations possibilities. E.g. a Python plugin that sets this...

jmrk84

default program for *.k.zip and *.nml

1

Showing a message like browsers do: > »This Knossos instance is currently not your default file handler…« > »Register this Knossos exe« »Ignore for now« »Don’t bother me until i...

Optiligence

Segmentation: red color for overlapping objects is misleading

1

The red color just looks like another object color instead of some special information color. Another highlighting is needed.

my-tien

`ctrl` is used to switch from object based merge/unmerge mode to subobject mode, so it would be intuitive if the rendering would reflect that.

Optiligence