knossos
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KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.
 See attached image. Borders should be completely continuous.
A plugin to visualize connectivities between sets of tracings. The plugin renders an interactive wiring matrix. Clicking on the column / row labels representing the tracing names fetches a skeleton...
At the moment the supercube can be invalidated at any given moment. This has been OK so far because the user knew what he was doing so he didn't care...
The plugin interface should be as accessible as possible to users, that means we need good API documentation and well-commented examples. Oren, you can coordinate with Michael and My-Tien -...
When user is idle CPU usage should be as low as 4-8% (now that we instated the slice+render idle avoidance), but for some reason right _now_ it's 15-25%. In other...
...and save the world, by allowing responsive interaction / heavy computation in the main thread (more specifically in plugins).
Currently there are two operation modes - segmentation and skeletonization. In both modes all overlay and data objects are in place, the only difference is the behavior of the GUI:...
M=5 requires 2GB, for many users this is already unacceptable. M=7 is 5.5GB, that's not even possible on 32bit systems. We need something more efficient than a memory supercube (hard-drive?)...
The function should be implemented in Loader (but callable directly from the main thread, in respect to Qt ownership and synchronization etc.) and return information (cube/global coords) about the valid...
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KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.