Kyle Ellrott
Kyle Ellrott
Updating behavior for dealing with tags that use the digest format (https://docs.docker.com/engine/reference/commandline/images/#list-image-digests) Example: ``` udocker pull ubuntu@sha256:7c9c7fed23def3653a0da5bc9ecb651efe155ebd5802c7ba5d585edaa6c89496 ``` Previously, this would have failed because the code would not accept the...
This PR add support for: - GenericS3 servers, ie non-AWS S3 services, such as CEPH or MinIO - Connecting S3 storage to the TES backend driver Remaining work: - [...
I'm looking for something similar to RocksDB's `PrepareForBulkLoad` ( https://github.com/facebook/rocksdb/blob/19ec44fd392beff927cacbd3a976415edb3d27e9/options/options.cc#L367 ) which sets all the options to write without doing much organization or compaction, and then you are expects to...
The line https://github.com/ohsu-comp-bio/funnel/blob/master/webdash/src/TaskInfo.js#L177 checks the log array, but if in system error state, there is no log structure.
I would like to question the way phenotypes are currently embedded in the 'Individual' structure ( https://github.com/ga4gh/schemas/blob/master/src/main/resources/avro/metadata.avdl#L96 ). The comments question 'Is this the right representation?', and I would point...
# Bug Report *Github issues is reserved for bug report. If you have a question, please don't use this form. Instead, please ask your question on the [Synapse Help Forum](https://www.synapse.org/#!SynapseForum:default).*...
The ability to download tables into TSVs using the command line client would be very helpful. Right now: ``` synapse get syn3156503 ``` returns ``` WARNING: No files associated with...
A one word patch to eliminate STDERR output that occurs at the end of the JobTree run. Galaxy's default behavior is to assume that any STDERR output means there was...
Make the `id` field from schema doc visible to user. This PD adds the `Id` field to `schema` struct and populates it using `draft.getID` method. Otherwise, the contents of the...
Build configurable mode where Funnel utilizes a Gen3 ( https://gen3.org/ ) as management system for authentication/authorization and DRS id resolution - [ ] Recognize HTTP headers used by Gen3 clients...