Kyle Ellrott

This isn't in funnel yet. We're looking at adding `backend_parameters` into the TES specification ( https://github.com/ga4gh/task-execution-schemas/pull/154 ). Once this is available, we will find a way to configure mappings into...

Answering a question earlier in the thread, Task Execution Schema ( https://github.com/ga4gh/task-execution-schemas ) is the protocol, Task Execution Server ( https://github.com/ga4gh/task-execution-server ) is the reference implantation. Both have the acronym...

We haven't looked at it yet. How hard is it to set up a test cluster?

We're doing some work on a Kubernetes backend at the moment. We might have some time after that, but we'd need to be able to build a test cluster first....

@jvkersch I want to make sure I understand the use case. You are deploying Funnel, using the shared file system storage driver, the Biocontainers act as user 10000 inside the...

The 'docker wrapper' solution is one we ended up using on our local cluster for some testing. Right now the docker worker code just invokes whatever docker it finds (...

So unvendoring `golang.org/x/net/trace` should fix it? Does it change infrequently enough?

Do you mind if we add these notes into our website docs?

This sounds cool. Have you looked at submitting your method for the DREAM RNA-Seq analysis challenge ( https://synapse.org/SMC_RNA ) ?

The enum is an attempt to get a data structure that 'subclasses'. The association represent multiple possible associations, but rather then put each of the into different data structures (like...