Karen Feng

Add tips to troubleshooting page

1

Users often accidentally make the following mistakes, which we should address in the [troubleshooting](https://glow.readthedocs.io/en/latest/troubleshooting.html) page: - Installing `glow` with Pypi, rather than `glow.py` - In v1.0.0: failing to set the...

Move alpha into grouping expression for ridge regression fit

2

During `RidgeRegression.fit()`, we group on `['sample_block', 'label']` but not on `'alpha'`. This becomes a limiting factor on our scalability due to PyArrow limits, which constrain the number of 8-byte float...

Today, we always write the sample IDs in the BGEN header. A common BGEN format is to have the sample IDs in a separate `.sample` file; we should support this...

The pipe transformer supports VCF/CSV/TXT input/output formatters, but not BGEN.

Classifying kmers error with bayesTyper 1.4.1 and 1.5

1

I'm having problems during the kmer classification step in `bayesTyper genotype` with both versions 1.4.1 and 1.5: ``` [19/10/2022 21:21:47] You are using BayesTyper (v1.4.1) [19/10/2022 21:21:47] Seeding pseudo-random number...