Curtis Kapsak

I go the same exact errors while running the unit test on ubuntu 16 (in a docker container). This was using the v0.2.0 release. Happy to help debug too. ```...

How did you install prokka? From your second output, it appears that none of the 'kingdoms' or 'HMM' databases were set up, despite 'Genera' and 'CMs' databases being set up....

I think @mr-c is the one of the maintainers for the prokka apt package (apologies for tagging you if not)? He may be able to assist @mmp3 and @wolfgangrumpf if...

Thanks for chiming in, Michael. And thank you for the info and context on what 'unstable' means! Much appreciated.

@mmp3 I recommend using conda, brew, or docker/singularity instead of installing from source + apt. Could you try one of those routes?

If you remove the this bit `2> /dev/null` from the end of that long one-liner, and re-run it manually, you should be able to see the error message that is...

You can try running that last command in the output, without the `2> /dev/null` in order to see the error message. I have a feeling the issue has to do...

Also having this issue. And weirdly after running the flowcraft generated nextflow pipeline, my backspace key longer works? commands used in a flowcraft conda env: ``` flowcraft build -t "trimmomatic...

It was with the latest version of nextflow 19.07. I'll try downgrading and see if that fixes it. Thanks for the quick response!

Downgrading to nf 18.10.1 made the nf pipeline run properly using the `-profile standard` option. Seems like the `-profile sge_sing` won't work for me, but that's likely due to my...