Fails at blast step?

[raw937]

Hello,

It continues to fail at the blastp step. Any thoughts? cat /projects/raw_lab/Cerberus/data/prokka_results_RW1//RW1.IS.tmp.30508.faa | parallel --gnu --plain -j 8 --block 6121 --recstart '>' --pipe blastp -query - -db /users/taouk/.conda/envs/cerberus_env/db/kingdom/Bacteria/IS -evalue 1e-30 -qcov_hsp_perc 90 -num_threads 1 -num_descriptions 1 -num_alignments 1 -seg no > /projects/raw_lab/Cerberus/data/prokka_results_RW1//RW1.IS.tmp.30508.blast 2> /dev/null

many thanks, Rick

[kapsakcj]

If you remove the this bit 2> /dev/null from the end of that long one-liner, and re-run it manually, you should be able to see the error message that is spit out. Should give you a better idea what went wrong