Kai Blumberg

Results 130 comments of Kai Blumberg

Hey @ramonawalls if possible I'd like to coordinate on this or perhaps diagram it out with some examples. BCODMO has some good examples of multi-step data processing, the annotation/representation of...

@ramonawalls I presume we would intend for this new `organism count` (quality) term to be used within a DOSDP pairing it with an NCBI Taxon term? Perhaps something like the...

If so would we want to pre-compose some examples within BCO? Projects like UA-SRC, BCODMO and Planet Microbe would all benefit form such a pattern. Should we pre-compose? E.g. certain...

Would you be willing to let me pre-compose some specific organisms in BCO for SRPDIO, Planet Microbe and or BCODMO? Or would this be better done importing these BCO classes...

Sounds good, I think I can prepare an appropriate DOSDP to generate this module. I presume I'll need to wait for the BCO release in order to import these `organism...

Yes agreed, I wasn't able to anything quite like `organism count` the closest thing I could find in PATO is [amount](http://purl.obolibrary.org/obo/PATO_0000070), which I guess is on track to be to...

Sorry I didn't see this before I wasn't tagged properly, see my comments in https://github.com/GenomicsStandardsConsortium/mixs/issues/154.

The new system created in collaboration with James Overton, Simon Cox and many others is intended to bridge the gap between existing systems UO, QUDT etc by leveraging UCUM, and...

Agreed hence my support for MIxS using the UCUM codes, they can later be resolved to the new ontology IRIs. On Tue, May 25, 2021 at 8:48 PM Chris Mungall...

@cmungall This could complement the work I'm doing using robot templates as a design pattern for the JGI GOLD/EBI microbiomes. Where @pbuttigieg was think we have a ``microbiome`` (or ``microbial...