Jennifer Chien

Results 14 comments of Jennifer Chien

I had the same issue. Check the R datatype for the metadata column that is having the issue using 'typeof()'. Try changing it to characters using 'as.character()' before running Convert.

Additional references pertaining to this issue, which states monocyte, macrophages, and dendritic cells as children on mononuclear phagocytes (MNP): - https://www.sciencedirect.com/science/article/pii/S1074761321002934 - https://www.frontiersin.org/articles/10.3389/fimmu.2017.00499/full You can also see in the [macrophage](https://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0000235)...

Related issue: https://github.com/EBISPOT/efo/issues/2212

Hello @zoependlington, I am a curator for https://cellxgene.cziscience.com/, and we are hoping to use these Visium terms for our next schema update. Is there anything additional that you would need...

Hello, @zoependlington, was wondering if these version specific Visium terms made it into EFO for the September release? Thanks!

Could have a more specific parent term: [EFO:0010961](http://www.ebi.ac.uk/efo/EFO_0010961)

Would be great to also have a corresponding `5' STRT-seq` so that both `3' STRT-seq` and `5' STRT-seq` both would be children under `STRT-seq` (EFO:0008953): Preferred term label: 5' STRT-seq...

Here are the pending lists. Will need to revisit/update once the pinned version of EFO is determined. **DROP LIST** ontology_id | ontology_label | from | Notes -- | -- |...

Tickets to track: - https://github.com/EBISPOT/efo/issues/2244 - https://github.com/EBISPOT/efo/issues/2392

@brianraymor The following should be added (and I will add to my tables above) - SHARE-seq: http://www.ebi.ac.uk/efo/EFO_0022962 - particle-templated instant partition sequencing: http://www.ebi.ac.uk/efo/EFO_0900000 - Asteria scRNA-seq kit: http://www.ebi.ac.uk/efo/EFO_0900001 - HIVE...