cell-ontology icon indicating copy to clipboard operation
cell-ontology copied to clipboard

[Typo/Bug] mononuclear & multinucleate phagocyte have no children!

Open dosumis opened this issue 4 years ago • 3 comments

CL term

mononuclear phagocyte http://purl.obolibrary.org/obo/CL_0000113

Description of typo, bug or error

image

@addiehl - any suggestions for how we might efficiently populate these classes?

dosumis avatar Sep 24 '21 11:09 dosumis

This issue has not seen any activity in the past 6 months; it will be closed automatically in one year from now if no action is taken.

github-actions[bot] avatar Mar 24 '22 02:03 github-actions[bot]

Also see https://github.com/obophenotype/cell-ontology/issues/561.

paolaroncaglia avatar Apr 26 '22 15:04 paolaroncaglia

This issue has not seen any activity in the past 6 months; it will be closed automatically in one year from now if no action is taken.

github-actions[bot] avatar Oct 24 '22 03:10 github-actions[bot]

Additional references pertaining to this issue, which states monocyte, macrophages, and dendritic cells as children on mononuclear phagocytes (MNP):

  • https://www.sciencedirect.com/science/article/pii/S1074761321002934
  • https://www.frontiersin.org/articles/10.3389/fimmu.2017.00499/full

You can also see in the macrophage definition that it is a mononuclear phagocyte. Screenshot 2023-09-21 at 10 56 05 AM

Also, is there a reason why mononuclear phagocyte is not a child of mononuclear cell?

I think the general confusion is that under leukocyte, there is a division between mononuclear cell and myeloid cell. However, typically, the distinction is made between lymphocyte vs myeloid cells because the cell lineage is derived from common lymphoid progenitor and common myeloid progenitor. There are many diagrams online, but here is one from wikipedia.

Screenshot 2023-09-21 at 11 11 37 AM

jychien avatar Sep 21 '23 18:09 jychien

  • [x] TODO - mononuclear phagocyte should be under 'mononuclear cell'
  • [x] TODO - populate subclasses under 'mononuclear phagocyte' These are currently under the general term 'phagocyte'

dosumis avatar Oct 18 '23 15:10 dosumis

TODO - populate subclasses under 'mononuclear phagocyte'

macrophage monocyte dendritic cell mononuclear osteoclast - This should be reasoned, as osteoclast should be classified as a phagocytic cell. However, as it is not (but it is on the textual definition), it is not included. I will add to the parent term SubclassOf 'phagocyte (sensu Vertebrata)' to ammend it.

aleixpuigb avatar Oct 26 '23 15:10 aleixpuigb