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New term request for modified version of STRT-seq

Open LuJiansen opened this issue 1 year ago • 1 comments

Preferred term label

modified STRT-seq

Synonyms

3' STRT-seq

Textual definition

A modified version of STRT-seq developed by Fuchou Tang's lab as described in PMID: 28457750, which enriched the 3' end of transcripts and used UMI (unique molecular identifier) for quantification.

Suggested parent term

STRT-seq (EFO:0008953)

LuJiansen avatar Jul 17 '24 03:07 LuJiansen

Would be great to also have a corresponding 5' STRT-seq so that both 3' STRT-seq and 5' STRT-seq both would be children under STRT-seq (EFO:0008953):

Preferred term label: 5' STRT-seq

Textual definition: A plate based platform that targets the 5' end of transcripts using a barcoded template switching oligonucleotide.

jychien avatar Jul 18 '24 18:07 jychien

Added as EFO_0022845 and EFO_0022846, which will be available after the October (15th) release.

zoependlington avatar Oct 14 '24 10:10 zoependlington