jwli

``` rule sort_bam: input: lambda wildcards: "02_bam/{sample}.{platform}.{mapper}.bam".format(sample=wildcards.sample, platform=get_platform(wildcards), mapper=MAPPER) output: "02_bam/{sample}.{platform}.{mapper}.sort.bam" threads: 10 resources: mem_mb = 10000 shell: """ {SAMTOOLS} sort -@ {threads} -O BAM -o {output} {input} rm {input}...

十分感谢 按照你推荐的已经测试成功

I would like to ask about merging vcf files from the results of minigraph and then filtering for SNP variants (excluding variants larger than 50bp). After that, I plan to...

@glennhickey Thanks. If a polyploid plant is an allopolyploid formed by the hybridization of two species, would it also face the same issues? The chromosome numbers of the two species...

> Hello, > > The conda recipe has not yet been updated, so please use the following command to install dependencies: For EDTA: `mamba create -n EDTA -c conda-forge -c...

Have you solved it? I had the same problem

> Thanks for the suggestion,Faye. But there are some new error reported. > > 2024年 08月 08日 星期四 17:47:21 CST EDTA_raw: Check dependencies, prepare working directories. > > 2024年 08月...

Error reported when I installed tensorflow directly. ``` Species: others /public/home/jwli1/data1/Brasscia_2024/02.TE/EDTA2/EDTA/bin/TIR-Learner3.0/bin/process_de_novo_result.py:33: SyntaxWarning: invalid escape sequence '\d' pattern = '(\d+)' Traceback (most recent call last): File "/public/home/jwli1/data1/Brasscia_2024/02.TE/EDTA2/EDTA/bin/TIR-Learner3.0/TIR-Learner3.0.py", line 80, in TIRLearner_instance...

Why is the proportion of SINE annotations much lower in the new version of EDTA compared to the previous version

`tRNA/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation.`