jwli

TGS流程磁盘储存资源占用过大

1

郑博士你好，我跑TGS的流程后发现 生成文件夹 02_bam 文件夹中同时保留了bam文件和 sort.bam文件，我的存储资源不是很大，生成sort.bam文件后是否就不需要bam文件?应该更改哪里的源代码可以实现这个目的。

Construct a generation-level pan-genome

5

In the future, I want to map the resequencing data of different species of onto my map genome.Then the group vcf with good classification is used to carry out the...

coverage/quorum

1

I would like to know what the coverage/quorum parameter means. `histgrowth -t4 -l 1,2,1,1,1 -q 0,0,1,0.5,0.1`

Whether the model can be retrained in plants

2

Whether the model can be retrained in plants

combine_RMrows.pl erro

1

Use of uninitialized value $prev_row{"SW_score"} in concatenation (.) or string at /public/home/xx/EDTA-master/util/combine_RMrows.pl line 140, line 27973.

ValueError: File format not supported

2

`Parameters: --genome /public/home/jwli/2024_disk/Brasscia_2024/00.data/BP11.chrplus.genome.fasta --species others --anno 1 --sensitive 1 --step all --t 20 Sat Jul 20 01:30:39 CST 2024 Dependency checking: All passed! Sat Jul 20 01:31:05 CST 2024 Obtain...

When comparing two instances of EDTA2 installed in different environments, the proportion of LINEs and SINEs is significantly lower in the case where a specific log message appears compared to...

singularity ERRO

3

`singularity exec ../EDTA.sif EDTA.pl --genome genome.fa --cds genome.cds.fa --curatedlib ../database/rice7.0.0.liban --exclude genome.exclude.bed --overwrite 1 --sensitive 1 --anno 1 --threads 5 ######################################################### ##### Extensive de-novo TE Annotator (EDTA) v2.2.0 ##### #####...

vg autoindex --workflow mpmap

1

I executed the command vg autoindex --workflow mpmap, but it consumed a large amount of memory and resources. I would like to know if it's possible to construct the index...

break parameter

1

When running CRAQ, I didn't pay attention to using the --break=T parameter, and now I have completed all the results. How can I generate the Break sequence?