oushujun
LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation.
There are no errors or warnings in my log, but at the end there is a lot of "LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. "Does this affect the subsequent analysis? How can I solve this problem?
log： 2024年 08月 05日 星期一 07:36:44 CST EDTA_raw: Check dependencies, prepare working directories. 2024年 08月 05日 星期一 07:36:47 CST Start to find LTR candidates. 2024年 08月 05日 星期一 07:36:47 CST Identify LTR retrotransposon candidates from scratch. 2024年 08月 05日 星期一 10:49:58 CST Finish finding LTR candidates. 2024年 08月 05日 星期一 10:49:58 CST Start to find SINE candidates. 2024年 08月 05日 星期一 14:56:48 CST Finish finding SINE candidates. 2024年 08月 05日 星期一 14:56:48 CST Start to find LINE candidates. 2024年 08月 05日 星期一 14:56:48 CST Identify LINE retrotransposon candidates from scratch. 2024年 08月 06日 星期二 03:32:51 CST Finish finding LINE candidates. 2024年 08月 06日 星期二 03:32:51 CST Start to find TIR candidates. 2024年 08月 06日 星期二 03:32:51 CST Identify TIR candidates from scratch. Species: others 2024年 08月 06日 星期二 22:14:36 CST Finish finding TIR candidates. 2024年 08月 06日 星期二 22:14:36 CST Start to find Helitron candidates. 2024年 08月 06日 星期二 22:14:36 CST Identify Helitron candidates from scratch. 2024年 08月 07日 星期三 13:04:37 CST Finish finding Helitron candidates. 2024年 08月 07日 星期三 13:04:37 CST Execution of EDTA_raw.pl is finished! LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation. LINE/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation.
I changed the TE_Sequence_Ontology.txt. I added “LINE/NA” to it. The error didn't happen again, but I'm not sure if it's correct.
You are right about the lack of LINE/NA previously. I just updated EDTA. You may also try if you like!
Best, Faye
