Jakob Vanhoefer
Jakob Vanhoefer
Looks like something @PaulJonasJost could be up to?
Regarding (4): What about having one of (1)-(3) an optional "PEtab importer" argument, which would allow to get the nominal parameters from there? As the current implementation does require the...
> Strongly opposed. Introducing a PEtab+AMICI dependency in `pypesto/objective/base.py` completely breaks the modularity we so far tried to maintain. Agree, that was also not, how I meant my suggestion. :)
(I know, that visualization is potentially problem dependent, but this should still be a rather standard plot)
:+1: Nice idea!
As a more general remark: Setting the aspect ratio via `set_aspect` does not work together with inverting the y axis with `invert_yaxis`. (As `invert_yaxis` does not give an equal aspect...
> As a more general remark: Setting the aspect ratio via `set_aspect` does not work together with inverting the y axis with `invert_yaxis`. (As `invert_yaxis` does not give an equal...
I am not so familiar with the technical aspects in Pesto, so I do not see the technical implications... I am fine with the current solution, but I would also...
models regarding cell cycle/circadian clock should be a good point to start...
@LeonardSchmiester Would you have the PEtab tables around (i.e. at least the data)? I would be interested in using the raw data and would not need the model itself