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Automatic generation of PEtab visualization tables from fitting results

Open jvanhoefer opened this issue 5 years ago • 2 comments

I think, it would be great, to have a function, that takes the result of a parameter optimization run from a PEtab-problem and creates a PEtab visualization table (+necessarily a simulation table). E.g. for each condition a subplot, that contains trajectories of the observables + data points (+ (fitted) std.dev...).

jvanhoefer avatar Sep 17 '20 15:09 jvanhoefer

(I know, that visualization is potentially problem dependent, but this should still be a rather standard plot)

jvanhoefer avatar Sep 17 '20 15:09 jvanhoefer

Which information from the optimization result should be used for visualization table generation? I mean, is there a reason why you think in should be implemented in pyPESTO? Have you tried save_vis_spec function from petab.visualize?

plakrisenko avatar Oct 26 '20 19:10 plakrisenko