James Stevenson

Results 24 comments of James Stevenson

I think that step is just referencing a set of files (presumably from `ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/`) that are expected to be available under that subdirectory/glob. Could mention this or include a basic...

To sum up my previous comment, I think there are three things going on: 1) The September SeqRepo release is missing some sequences. I think this has been resolved but...

I really like Furo as well -- though given that biocommons.org is using Material for Mkdocs, maybe it'd be better to standardize biocommons docs around that?

Made a couple small tweaks on top of work from @erik-whiting -- * Sort the big ontology table by default -- by dash status, then ID. The screenshots below sort...

Re 4/16 call -- consensus on badge just saying "QC", embed in "re-use" column

Finally circling back -- implemented requests from 4/16 call, made some style tweaks, handle some broken links: Two other notes (+ some example screenshots): badges can also say "Processing error:...

@matentzn almost -- I just need to plug in a hard link to the dashboard results JSON file (for some reason I couldn't find it yesterday, but checked today and...

- Add a static badge (defined in `assets/json/`) for obsolete ontologies/anything that doesn't show up in the dashboard. I may end up needing to hotfix the exact URL since it...

yup -- main page, grouped further down, ungrouped "NA" badge

> I would prefer to keep them separate since in gene-normalizer, we only use the Pydantic models and would like to keep deps lightweight Yeah I agree that simply merging...