James Stevenson

Results 74 comments of James Stevenson

@theferrit32 I think my preference would be to remove the print message entirely, outputting to logs should be sufficient

> Change SEQREPO_URI in vrs-python hgvs_tools.py to use SEQREPO_DATAPROXY_URI Is there a purpose for this `__main__` code block in the first place? If it's meant as a demo, we should...

> Thoughts on adding a CLI to vrs-python alongside the vrs-annotate one, called like vrs-translate which works similarly but just accepts raw hgvs/spdi/gnomad/beacon strings via the CLI and prints to...

Just pitching in: I'd be a little bummed if we lost support for Ensembl transcripts. Could we just assume cDNA and log a `warning` indicating as much every time an...

fwiw, behavior looks correct to me when I test manually -- I wonder if the cassettes need to be regenerated?

I think this fell off all of our collective radars. Picking up from the last comment from @andreasprlic > As such, how hard would it be to have two options...

Does this need to be resolved with #532 ?

Other TODO's - [x] Fix navbar link to "other publications" anchor - [x] Citations sidebar (currently gets the personnel sidebar for some reason)

Great! Just double checking -- is there anything that could be added under "other OBO foundry papers"?

@nlharris strictly speaking, the GitHub review process wants me to re-attain Nico's approval, but I think it's implicit so I'd be happy to go ahead and squash