James Stevenson

Results 74 comments of James Stevenson

This should be closed in #151 -- but definitely reopen if there's still anything lingering

Hi, I haven't been able to reproduce this (four years later... ) but please feel free to reopen if it continues to be a problem.

I believe this was fixed in #149. I'm going to remove the `bug` label which will allow stalebot to close this issue automatically after a while, but we can restore...

I don't necessarily want to close this yet, but we're currently trying to be more purposeful about basing things like styling off of what's defined in the [template](https://github.com/biocommons/biocommons.example) first. That's...

Hi @mbutterfield-GENOME -- could you give me a complete codeblock to reproduce this? It looks like you're encountering this by way of the `hgvs` package, so a snippet showing what...

I should add that the result in the traceback above seems to be for chromosome 14, not 11 ``` In [9]: sr.translate_identifier("ga4gh:SQ.eK4D2MosgK_ivBkgi6FVPg5UXs1bYESm") Out[9]: ['Ensembl:14', 'ensembl:14', 'GRCh38:14', 'GRCh38:chr14', 'GRCh38.p1:14', 'GRCh38.p1:chr14', 'GRCh38.p10:14',...

The failing test in question was located here: https://github.com/OBOFoundry/OBOFoundry.github.io/blob/master/tests/test_memberships.py I assume the point of testing against a sorted set of fields is to ensure that a) no fields are missing...

one other thought: I can't remember if the CLI prints anything to stdout or takes a `--silent` param or anything, but if it does you'd need to force silence when...

> Oh wait --silent suppresses that Yeah I think directing output to stdout without selecting `--silent` should maybe raise an exception, or force silent behavior

Yeah I'd also be happy with doing away with printing info statements to the console entirely. Just want to make sure that no one is accidentally transmitting them into a...