jsbamboo

update bin_to_cube tool

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1. modify ``bin_to_cube'' according to https://github.com/NCAR/Topo.git for cubed base topo generation 2. read parameters from ``bin_to_cube.nl'' manually pin @mt5555

update mach config for Livermore Computing for maint-2.0

- update mach config for Livermore Computing (maint-2.1) according to scream repo - have to remove `--append` in config_machines.xml for these two branches - the changes for maint-2.1 and maint-2.0...

@qinyia reported this issue when try "generate new atm/land grid" workflow. The error of mksurfdata.pl is: `ERROR: mapping file for this resolution does NOT exist (... map_0.01x0.01 ...). ` Seems...

EAMxx: site output from 1-to-1 extraction has more zeros and inconsistent values with native output at some locations

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There was a problem in the site_nearest output in the wprrmxx tests after sparse output fixes: - site_nearest online remapping output with PR7350 fix or my local "map_file_min_col = 1;"...

Feature Request: Support horiz_remap_file for np4/gll -> dst grid

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Feature Request: Support horiz_remap_file for np4/gll -> dst grid (follow-up to #7257) **Motivation** The `horiz_remap_file` functionality currently works for `pg2` -> dst grids but fails for `np4/gll` -> the same...

EAMxx: slowdown when using high-frequency horiz_remapper

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We observed a significant slowdown in RRMxx tests related to output writing (machine: dane). Two tests, named O34 and O38, differ only in their yaml files. The SYPD are 0.066...

EAMxx: conditional sampling + horiz_remap outputs contain many big values

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Some conditional sampling outputs for an EAMxx RRM all have big values (seems like they didn't mask the missing values in the online calculation). Strangely, for DPxx, the "big value"...