Julianus Pfeuffer

Oh yes, you need to `pip install dlltracer` into that env first. I forgot.

Hmmm can you try running it from an elevated/admin command line or python Run as Administrator? Do you have those permissions? I think they are unfortunately necessary for this kind...

In theory it should not affect the execution but I cannot guarantee. Maybe it's also the way that fragpipe calls easypqp that calls pyopenms.. (and the permissions involved in spawning...

Error: ``` 07:57:25 BIOCONDA ERROR Unexpected exception in lint Traceback (most recent call last): File "/opt/mambaforge/envs/bioconda/lib/python3.12/site-packages/bioconda_utils/lint/__init__.py", line 557, in lint msgs = self.lint_one(recipe_name, fix=fix) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/opt/mambaforge/envs/bioconda/lib/python3.12/site-packages/bioconda_utils/lint/__init__.py", line 580, in...

For both lysc and multi enzymes you will need to give up consensus id compatibility then. A fix for Lysc is just a simple if-case logic in the workflow. Multi...

We could make this workaround for this special case on the workflow level by allowing multi enzymes on workflow level only. Then you would see trypsin/lys-c in the workflow reports...

Ah ok I completely misread the issue then haha

What is "non-sage"? Comet?

Sage comes on top or as replacement? How expensive is the snr/feature calculation? I think we could improve the pyopenms script if it is expensive. Have you tried a more...

Hi! Just to clarify, what is the exact output? You are saying that already the first step (i.e. MassTraceDetection) failed, right? Do you think you could reduce the example/code to...