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Defining more enzymes in OpenMS Comet adaptor

Open ypriverol opened this issue 1 year ago • 11 comments

Description of feature

Currently, @timosachsenberg @jpfeuffer comet only support 'Asp-N,Chymotrypsin,CNBr,no cleavage,unspecific cleavage,Trypsin,Arg-C,Lys-C,Lys-N,PepsinA,Trypsin/P,glutamyl endopeptidase' However comet has a way to pass a definition of more enzymes https://uwpr.github.io/Comet/parameters/parameters_202301/search_enzyme_number.html using a parameter file. How can we use that possibility to define for example Lys-C/P currently Lys-C will not work because msgf+ processor change it to Lys-C/P and comet do not supported it.

ypriverol avatar Feb 22 '24 07:02 ypriverol