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Hi @mgabriell1 Thank you for your interest in gapseq! What you are proposing is indeed an interesting application! My first guess would be to check out the reaction attributes table...

I could fix the error when I manually updated the sambamba package to a newer version ``` conda activate ./atlas/conda_envs/a32852c4a348f4bdf18d06b3a8e8b953_ conda install sambamba ``` Do you know the reason for...

hi @Fake-star The conda package is currently in development and unavailable under Windows (see #217). In general, installing gapseq in a Windows environment is not supported yet. However, it should...

hi, Fake-star. It should run without problems on desktop computers or notebooks, even older ones.

Your installation still was not successful: `Rscript` and `Biostrings` are missing, see the output of `gapseq test` Maybe this can help with Rscript on windows: https://info201.github.io/r-intro.html#running-r-cmd

There seems to be a problem with the GitHub integration in readthedocs. I regenerated the webhook and rebuilt the documentation manually, but it should work automatically for future commits.

That sounds really good. I am looking forward to the update!

hi @cdiener Thank you for reporting the issue! I looked into it, and the methanogenesis predictions still work for _M. barkeri_ (GCF_000195895.1), _M. smithi_ (GCF_000016525.1), and also M. thermautotrophicus (GCF_000008645.1)....

That's a valid point; I did not consider it; thanks! I have a pathway (`METHANOGENESIS-PWY`) found for *M. barkeri* (83% completeness) and partially also for *M. smithii* (66% completeness) using...

Dear @cmkobel Many thanks for your kind feedback and for pushing the gapseq conda package! In the past, we considered creating a conda package but hesitated precisely because of the...