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I would use the medium already for gap-filling to ensure that all organisms can grow under the medium conditions. In BacArena, `addDefaultMed()` could work, but it is not additive, so...

To your first question, I would not expect to see any toxin or stress effects with metabolic models because the modeling approach does not cover it. But I'm not completely...

Many thanks. This was what I was looking for! I had to slightly change the regex in your `str_detect()` call to make it work for me: `dplyr::filter(stringr::str_detect(author, "\\.\\.\\."))`

hm the latex thing seems unstable indeed! What I can say is that editing worked with the baumgarr version. And only some latex code seems to cause a sync error....

@robert7 sorry I just updated to >2.1.2-f ! As far as I can see right now, it is working. I'm quite happy to have it back :o) Thank you very...

Is it worth to think about something else than ``mimetex`` because its output has lower quality? Maybe [textogif](https://www.fourmilab.ch/webtools/textogif/textogif.html) or [tex2im](http://www.nought.de/tex2im.html) are alternatives with higher quality formulas?

Hi @lxsteiner The seawater medium (meerwasser.csv) is a very generic growth medium that we once created for modeling microbes from sponges. Although it is not very specific, it could be...

hi @cdanielmachado I'm still struggling with this 'n/a' value when calculating the MIP I used carveme 1.5.1 to create the models (default settings) and tried all the mentioned flavor flags...

hi @SilasK, many thanks for your reply! I checked the bigger bins with low-quality scores, and I found some fungi contigs, but the bins seem rather very much chimeric or...

good idea; I will investigate the contig and gene level! I have tried taxonomic profiling mmseqs2 so far and found fungi genes in the genecatalog fasta, which is good news.