jo

relative image path

1

Hi, great plugin that is really helpful to render my markdown files, thanks a lot! My question is if there is a way to set a `root path` for image...

problems downloading representative genome

4

I'm trying to download the refseq representative genome for ``Vibrio lentus`` as it is listed here https://www.ncbi.nlm.nih.gov/genome/?term=vibrio+lentus%5Borgn%5D and it also has the coresponding refseq category http://tiny.cc/hncrdz But when I try...

improve sulfur metabolism in models

2

as suggested in euba/BacArena#178

Thank you for the gRodon package, which is really very useful for me when analyzing codon usage bias! I have a question concerning the GC output of `predictGrowth`. What does...

plans for supporting fungi

4

Is there a current plan to include other microorganisms like fungi? It would most probably involve other tools and databases, but at least for the assembly, spades could work, too....

eggnog annotation

2

Hi, is there still a plan to incorporate further annotation resources like eggnog, as outlined in #102 ?

installation fails with newer flash-attn version

1

Installation of openfold didn't work for me with cuda 12.4 and latest flash-attention: ``` Failed to build flash-attn Pip subprocess error: Running command git clone --filter=blob:none --quiet https://github.com/NVIDIA/dllogger.git /tmp/pip-req-build-zrt57w23 error:...

Error with example data in rule combine_contig_stats (probably caused by old sambamba version)

8

I'm running the latest stable release of the atlas pipeline with the example data. - [x] I checked and didn't found a related issue,e.g. while typing the title - [x]...

### Operating system Linux ### Joplin version 3.5.7 ### Desktop version info Joplin 3.5.7 (prod, linux) Web Clipper Version 2.11.2 ### Current behaviour Joplin's Web Clipper often has problems when...