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Hi @tseemann, this is related to the fasta export right? With bedtools

hi @wtscott31 From your output, I would say that adding the pathway 14DICHLORBENZDEG-PWY should have worked, whereas for the pathways PWY-6083, PWY-6081, PWY-6090, PWY-6091 no candidate reaction could be found...

hi @wtscott31 I'm sorry it took me some time, but there should be suitable candidate reactions for all the pathways by now! What needs to be checked is if chlorobenzene...

hi @bananabenana although this sounds interesting we do not see gapseq as an annotation software in the first place. nonetheless, it's a nice use case. I labeled it as a...