josruirod

Hi, so I've used bowtie2 many times before, but I have now encountered an unexpected problem with the indexing process on the last version (v2.4.5). So I downloaded the GRCm39...

"add_row_annotation" , how to assign custom colors

2

Hello, I'm writing because I've been using iheatmapr a lot with very good results, but lately I've been struggling to assign custom colors to add_row_annotation. I've been using: add_row_annotation(data_heatmap, data.frame("Clusters"...

Hi and thanks for the tool. As instructed, I want to use it to map a de novo genome assembly from pacbio long reads to a reference genome. I'm not...

Question on threshold of unique-kmers/reads to assess false positives

2

Hi, so I wanted to ask if nayone has any rule of thumb to assess the presence of false positives in the final krakenuniq report. For example, I'm seeing what...

ERROR: Could not write to temporary file: basic_ios::clear: iostream error

3

Hi and thanks for the work. I'm running krakenuniq on paired-end fastq files to perform classification. It has worked so far on our cluster, but for some samples I'm getting...

shiftGAlignmentsList time

4

Hi, congrats on the package. I'm going to integrate it in my pipelines I am particularly interested on shiftGAlignmentsList. I think it's really useful to shift reads while keeping bam...

Hi, Since support seems to have been dropped, it seems like a long shot, but any suggestion regarding this error would be much appreciated. Thanks anyone! > [1] "reading in...

Trouble running the example

56

Hi, and congratulations for the software. I want to give a try, and I managed to successfully install it (the conda environment and the step-by-step process is much appreciated, but...

Hi, thanks for the work. I have installed p7zip through the ubuntu software center in Ubuntu 16.04. Strangely, I cannot access the typical bar on the top of the screen,...