Trouble running the example

[josruirod]

Hi, and congratulations for the software. I want to give a try, and I managed to successfully install it (the conda environment and the step-by-step process is much appreciated, but there are few inaccuracies in the readme, such as FIND instead of find when running, or where is install.sh or the folder where the compressed files for the external software has to be downloaded). When running the example as it's written in readme, I'm getting the following errors, like it's missing some files:

mv: cannot stat '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/psiclass_output_sample_0.gtf': No such file or directory mv: cannot stat '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/psiclass_output_sample_1.gtf': No such file or directory mv: cannot stat '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/psiclass_output_sample_2.gtf': No such file or directory mv: cannot stat '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/psiclass_output_sample_3.gtf': No such file or directory mv: cannot stat '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/psiclass_output_sample_4.gtf': No such file or directory mv: cannot stat '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/psiclass_output_sample_5.gtf': No such file or directory mv: cannot stat '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/psiclass_output_sample_6.gtf': No such file or directory mv: cannot stat '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/psiclass_output_sample_7.gtf': No such file or directory mv: cannot stat '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/psiclass_output_sample_8.gtf': No such file or directory mv: cannot stat '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/psiclass_output_vote.gtf': No such file or directory Traceback (most recent call last): File "/bin/finder/finder", line 626, in main() File "/bin/finder/finder", line 587, in main orchestrateGeneModelPrediction(options,logger_proxy,logging_mutex) File "/bin/finder/finder", line 411, in orchestrateGeneModelPrediction findTranscriptsInEachSampleNotReportedInCombinedAnnotations(options,logger_proxy,logging_mutex) File "/bin/finder/scripts/findTranscriptsInEachSampleNotReportedInCombinedAnnotations.py", line 17, in findTranscriptsInEachSampleNotReportedInCombinedAnnotations combined_transcript_info=readAllTranscriptsFromGTFFileInParallel([combined_gtf_filename,"combined","combined"])[0] File "/bin/finder/scripts/fileReadWriteOperations.py", line 202, in readAllTranscriptsFromGTFFileInParallel fhr=open(gtf_filename,"r") FileNotFoundError: [Errno 2] No such file or directory: '/bin/finder/example/FINDER_test_ARATH/assemblies_psiclass_modified/combined/combined.gtf'

Can you please provide some support? Thanks