Josh Moore

Nice! Looking for similar locations: ``` (base) /opt/bf1 $git grep -E 'reader = .*new ImageReader' | grep -vE "(IFormatReader|ImageReader) reader" | grep -v test components/bio-formats-tools/src/loci/formats/tools/ImageConverter.java: reader = new ImageReader(); components/bio-formats-tools/src/loci/formats/tools/ImageInfo.java:...

Hi @sebi06. The error message was added in https://github.com/openmicroscopy/bioformats/pull/3344 to allow execution to continue despite the NullPointerException. You can read more about the root cause in https://github.com/ome/ome-common-java/pull/38 -- but the...

First off, wow. I find this very exciting. I only ever approached propagating to the most necessary readers in the IDR context. I do wonder if we're doing this across...

> wait for zarr v2.13 release, Done. And should be out on conda-forge later today.

It turns out that the column aliasing is simple enough in a preprocessing step that I combine it with xlsx2csv before starting my linkml workflow. (Once I know more about...

> Next step is to make a unit test for this (good first issue for a linkml dev) I have a test locally but it's still failing. I was hoping...

See https://github.com/linkml/linkml/issues/947

> allow you to define your own field that acts as a type designator I took at look at the `designates_type` but it felt like I would be adding redundant...

> Are you suggesting this should be done in a separate PR? Sorry, @jhamman. I mean that V3 is in-flux enough it's going to be hammered on enough outside of...

Thanks, @GbotemiB. It certainly seems so! However, I do wonder if that's only an issue on Windows, and if so, if we can do something to make it not the...