Josh Moore

Results 1054 comments of Josh Moore

Hmmm.... so what's the next step here, @will-moore ?

See https://github.com/ome/ome-zarr-metadata/releases/tag/0.1.0 for an example of an entrypoint. After creating a fake .zgroup under the output of `bioformats2raw a.fake /tmp/a.ome.zarr` ``` $ ome_zarr info /tmp/a.ome.zarr/0/test/ /private/tmp/a.ome.zarr/0/test [zgroup] - metadata -...

> and with this PR I get all the sibling `A` Wells A2, A3, A4, but not B1-B4 or C1-C4. And I don't get labels for those Wells. @will-moore, you...

@will-moore, I've reverted the upwards parsing. It seemed like a good strategy but there are currently too many edge cases. I don't have labels on plates for testing at the...

In discussing today with @dgault, @sbesson, @jburel and @melissalinkert, there was a case made for at least adding the flag (`Leaf`) to make it possible for clients to detect that...

To improve the codecov results, see https://github.com/zarr-developers/numcodecs/pull/300/files#diff-bc37cd9860eec1facdc18a47798e8a1a2c0ef5dabd999deee049de4a48a5d35fR1 for an option of in-repo testing of entrypoints.

see a quick use of this functionality: - https://github.com/ome/ome-zarr-metadata/pull/1 - https://github.com/ome/napari-ome-zarr/pull/47

Migrated the bf2raw implementation from https://github.com/ome/ome-zarr-metadata : ``` $ bioformats2raw-0.5.0-SNAPSHOT/bin/bioformats2raw 'my&series=2.fake' test_output $ ome_zarr info test_output/ /opt/ome-zarr-py/test_output [zgroup] - metadata - bioformats2raw - data /opt/ome-zarr-py/test_output/0 [zgroup] - metadata - Multiscales...

Should we also discuss the name of the module itself?

Other than the string `bioformats2raw.layout` we're pretty free to change things here. (I'd say we definitely *don't* want to reproduce what we did with `omero` and we actually need to...