Josh Moore

Fake hashes fail validation

5

When trying to parse this converted fake: ``` $cat /tmp/plate.fake.ini plates=1 plateAcqs=1 plateRows=2 plateCols=2 fields=2 ``` `ome_types` complains about the validation of the XML: ``` $ome_zarr info /tmp/plate.ome.zarr/ WARNING:ome_zarr.io:version mismatch:...

Generate changelogs from fragements

8

e.g. https://github.com/ansible-community/antsibull-changelog/blob/main/docs/other-projects.rst At the moment, PRs regularly conflict due to conflicts to release.rst. By moving to a fragment based system, this _should_ go away. Any other recommendations for frameworks?

Enable testing on a big-endian image

10

Uses qemu-user-static to build on a big-endian system in order to test #844 TODO: * [ ] Add unit tests and/or doctests in docstrings * [ ] Add docstrings and...

v3: use dev version number (draft)

1

For discussion. Until v3 is finalized, using a "dev" marker for the v3 version string would prevent datasets that are written in a transitional state from becoming normative. This follows...

[v3] consider using position only and keyword only arguments

3

As a side note we might consider using position only and keyword only arguments in Zarr 3 to avoid these issues around renaming arguments. _Originally posted by @jakirkham in https://github.com/zarr-developers/zarr-python/issues/1018#issuecomment-1116879414_

Add pre-commit configuration

5

Sorry I missed the linting in the dev guide. I can recommend https://pre-commit.com/ for these type of checks, we use it heavily over at tskit: https://github.com/tskit-dev/tskit/blob/main/.pre-commit-config.yaml _Originally posted by @benjeffery...

Updates for zarr.readthedocs.io/

1

* [ ] Now that https://zarr.dev is no longer just a blog, we should link back from the documentation that's servered from readthedocs. * [ ] Update the logo cc:...

Surprising N5FSStore test failure

1

Using the Python 3.9 / Debian sid Dockerfile in #858 and checking out the master branch, `zarr/tests/test_core.py::TestArrayWithN5FSStore::test_nchunks_initialized` fails as below. This is _not_ the case for the Python 3.9 build...

Update (or automate) acknowledgements

3

see: https://zarr.readthedocs.io/en/master/#acknowledgments

Update fsspec minimal version?

9

I've just gotten this user report: ``` File "c:\users\c\napari\lib\site-packages\zarr\core.py", line 1836, in _chunk_getitems cdatas = self.chunk_store.getitems(ckeys, on_error="omit") File "c:\users\c\napari\lib\site-packages\zarr\storage.py", line 1085, in getitems return self.map.getitems(keys, on_error="omit") AttributeError: 'FSMap' object has...