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Ultrafast sequence typing and gene detection from NGS raw reads

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I found that STing is a very useful tool. I have a question about whether it's possible to use assemblies instead of NGS raw reads. In case I have Nanopore...

**Describe the bug** Hi, `preparing the database` is in the outline, but I don't see it in the README. Can you add it? ![image](https://github.com/jordanlab/STing/assets/14798/bef44278-0a63-4f05-ab21-b41c2e90e938) Thank you!

Hi, related to #11, could you show me what a profile file should look like for cg/wgMLST? I downloaded the wgMLST scheme from the ChewBBACA website and I want to...

Could you explain a little bit how to download a cgMLST scheme for Neisseria spp.. for use with this tool? I'm interested in doing this for a few samples but...