hnn-core

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[MRG] CI Cache

7

Address #561

chenghuzi

[WIP] GUI tutorial gamma

8

I am volunteering for the gamma tutorial. The diff will look better once #529 is merged @chenghuzi I need a method to show a particular drive. Do we have that?

jasmainak

[MRG] Add ability to record voltages and currents from all sections

2

This is an enhancement I've been meaning to add for awhile. Not sure if this is going to cause a lot of problems in terms of data transfer, but we'll...

ntolley

[WIP] MAINT: robustify install for different platforms

22

I haven't tested it properly but I think this would make the installation process more robust

jasmainak

CircleCI jobs speedup

3

Now it takes about 25 mins to build our doc and most of the time is spent on the doc building step. And a large part of dock building is...

chenghuzi

add CSD plot for comparing against animal studies

7

### Background The ability to calculate LFP for simulated electrodes in the model (#150) allow for time vs. depth laminar CSD plots to be generated. Laminar CSD (electrodes arranged vertically)...

jasmainak

SCI: Reference y-axis in LFP and CSD plots to the outer layer of cortex

1

As discussed in #517, this may involve re-referencing the z-coordinate of each constituent cell within the network such that 0 is at the very top of the cortical column. Then,...

rythorpe

[WIP] clean up network and drive tests

1

- [x] remove `drive_event_times()` from `drives.py` and update tests. Edit: note that `drives.py` will still have `_drive_cell_event_times()` which now entirely replaces the legacy `drive_event_times()` function. - [ ] set `add_drives_from_params=False`...

rythorpe

WIP: Upgrade plot_morphology

31

Closes #496 Goals: * Create new `viz.py` and corresponding `net.py` method to plot morphologies of the cells within a network: `plot_cell_morphologies` * Move common functionality of plotting cell morphologies in...

mjpelah

Optimization with calcium model

6

Hello, I am following the optimization tutorial. My question is about the part of the code where you load in the parameter file. So I created my parameters using hnn-core...

JBruce32