John Sundh

icon indicating an email [email protected]

icon company @NBISweden icon location Karlstad icon location Bioinformatician working for @NBISweden and specializing in metagenomics, Snakemake workflows and reproducible research.

Results 4 issues of John Sundh

Fewer assignments when reference has more taxonomic labels

3 comment

Hi! We're trying to benchmark assignTaxonomy together with some other tools for taxonomic classification of ASVs. In doing so we ran assignTaxonomy with 1000 test sequences against 3 versions of...

Conda verification error when installing krona on OSX

4 comment

I'm trying to install krona from conda but the installation fails on the `Verifying transaction:` step due to missing files specified in the manifest: >CondaVerificationError: The package for krona located...

An error occurred while retrieving available packages

5 comment

## Description I'm getting an error message saying "An error occurred while retrieving available packages" as well as "I know you want to give up, but wait a bit longer.."...

bug

Update coidb

Describe your pull request here ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates a...