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Published 20 hours ago • verified publisher icon mamba-org

An error occurred while retrieving available packages

Open johnne opened this issue 1 year ago • 5 comments

Description

I'm getting an error message saying "An error occurred while retrieving available packages" as well as "I know you want to give up, but wait a bit longer.." which never ends. In my terminal I get

[D 2023-05-05 07:59:37.313 ServerApp.mamba_gator] ...
[D 2023-05-05 07:59:39.573 ServerApp.mamba_gator] Accepting token-authenticated connection from 127.0.0.1
[D 2023-05-05 07:59:39.592 ServerApp.mamba_gator] 202 GET /conda/tasks/3?1683266378066 (127.0.0.1) 19.02ms
[E 2023-05-05 07:59:39.626 ServerApp.mamba_gator] Error for task {'type': 'InvalidVersion', 'error': "Invalid version: '2022.02.02.gr3.9'", 'message': 'InvalidVersion("Invalid version: \'2022.02.02.gr3.9\'")', 'traceback': ['  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/handlers.py", line 96, in execute_task\n    result = await f(*args)\n             ^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/handlers.py", line 380, in update_available\n    answer = await env_manager.list_available()\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/envmanager.py", line 692, in list_available\n    packages = await current_loop.run_in_executor(None, format_packages, data)\n               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/concurrent/futures/thread.py", line 58, in run\n    result = self.fn(*self.args, **self.kwargs)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/envmanager.py", line 662, in format_packages\n    version = parse(entry.get("version", ""))\n              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/packaging/version.py", line 52, in parse\n    return Version(version)\n           ^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/packaging/version.py", line 198, in __init__\n    raise InvalidVersion(f"Invalid version: \'{version}\'")\n']}.
[D 2023-05-05 07:59:40.603 ServerApp.mamba_gator] Accepting token-authenticated connection from 127.0.0.1
[D 2023-05-05 07:59:40.604 ServerApp.mamba_gator] {'type': 'InvalidVersion', 'error': "Invalid version: '2022.02.02.gr3.9'", 'message': 'InvalidVersion("Invalid version: \'2022.02.02.gr3.9\'")', 'traceback': ['  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/handlers.py", line 96, in execute_task\n    result = await f(*args)\n             ^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/handlers.py", line 380, in update_available\n    answer = await env_manager.list_available()\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/envmanager.py", line 692, in list_available\n    packages = await current_loop.run_in_executor(None, format_packages, data)\n               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/concurrent/futures/thread.py", line 58, in run\n    result = self.fn(*self.args, **self.kwargs)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/envmanager.py", line 662, in format_packages\n    version = parse(entry.get("version", ""))\n              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/packaging/version.py", line 52, in parse\n    return Version(version)\n           ^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/packaging/version.py", line 198, in __init__\n    raise InvalidVersion(f"Invalid version: \'{version}\'")\n']}
[E 2023-05-05 07:59:40.605 ServerApp.mamba_gator] {
      "Host": "localhost:8890",
      "Accept": "*/*",
      "Referer": "http://localhost:8890/lab",
      "User-Agent": "Mozilla/5.0 (Macintosh; Intel Mac OS X 10.15; rv:109.0) Gecko/20100101 Firefox/112.0"
    }

I'm able to run both conda search --json and mamba search --json which I saw could be a problem in another issue (#127)

Screenshot 2023-05-05 at 08 07 37

Reproduce

  1. Activate Conda environment with jupyterlab and gator_lab installed
  2. Run jupyter lab

Expected behavior

No error messages

Context

  • Python package version: Version: 3.11.3 Build: h1456518_0_cpython
  • Extension version: Version: 5.2.0 Build: pyhd8ed1ab_0
jupyter labextension list
Config option `kernel_spec_manager_class` not recognized by `ListLabExtensionsApp`.
[W 2023-05-05 08:02:54.466 LabApp] Config option `kernel_spec_manager_class` not recognized by `LabApp`.
JupyterLab v3.6.3
/Users/johnlarsson/mambaforge/envs/jupyter/share/jupyter/labextensions
        jupyterlab_pygments v0.2.2 enabled OK (python, jupyterlab_pygments)
        nbdime-jupyterlab v2.2.0 enabled OK
        jupyterlab_templates v0.4.0 enabled OK (python, jupyterlab_templates)
        @mamba-org/gator-lab v3.1.0 enabled OK (python, mamba_gator)
        @voila-dashboards/jupyterlab-preview v2.2.0 enabled OK (python, voila)
        @jupyterlab/github v3.0.1 enabled OK (python, jupyterlab_github)
        @jupyterlab/git v0.41.0 enabled OK (python, jupyterlab-git)
        @jupyter-widgets/jupyterlab-manager v5.0.7 enabled OK (python, jupyterlab_widgets)

Other labextensions (built into JupyterLab)
   app dir: /Users/johnlarsson/mambaforge/envs/jupyter/share/jupyter/lab
        @quarto/jupyterlab-quarto v0.1.42 enabled OK
  • General information:
conda info 

     active environment : jupyter
    active env location : /Users/johnlarsson/mambaforge/envs/jupyter
            shell level : 2
       user config file : /Users/johnlarsson/.condarc
 populated config files : /Users/johnlarsson/mambaforge/.condarc
                          /Users/johnlarsson/.condarc
          conda version : 23.3.1
    conda-build version : not installed
         python version : 3.10.9.final.0
       virtual packages : __archspec=1=arm64
                          __osx=13.3.1=0
                          __unix=0=0
       base environment : /Users/johnlarsson/mambaforge  (writable)
      conda av data dir : /Users/johnlarsson/mambaforge/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/osx-arm64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/osx-arm64
                          https://conda.anaconda.org/bioconda/noarch
          package cache : /Users/johnlarsson/mambaforge/pkgs
                          /Users/johnlarsson/.conda/pkgs
       envs directories : /Users/johnlarsson/mambaforge/envs
                          /Users/johnlarsson/.conda/envs
               platform : osx-arm64
             user-agent : conda/23.3.1 requests/2.28.2 CPython/3.10.9 Darwin/22.4.0 OSX/13.3.1
                UID:GID : 502:20
             netrc file : None
           offline mode : False
Command Line Output 
[D 2023-05-05 07:59:37.313 ServerApp.mamba_gator] ...
[D 2023-05-05 07:59:39.573 ServerApp.mamba_gator] Accepting token-authenticated connection from 127.0.0.1
[D 2023-05-05 07:59:39.592 ServerApp.mamba_gator] 202 GET /conda/tasks/3?1683266378066 (127.0.0.1) 19.02ms
[E 2023-05-05 07:59:39.626 ServerApp.mamba_gator] Error for task {'type': 'InvalidVersion', 'error': "Invalid version: '2022.02.02.gr3.9'", 'message': 'InvalidVersion("Invalid version: \'2022.02.02.gr3.9\'")', 'traceback': ['  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/handlers.py", line 96, in execute_task\n    result = await f(*args)\n             ^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/handlers.py", line 380, in update_available\n    answer = await env_manager.list_available()\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/envmanager.py", line 692, in list_available\n    packages = await current_loop.run_in_executor(None, format_packages, data)\n               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/concurrent/futures/thread.py", line 58, in run\n    result = self.fn(*self.args, **self.kwargs)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/envmanager.py", line 662, in format_packages\n    version = parse(entry.get("version", ""))\n              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/packaging/version.py", line 52, in parse\n    return Version(version)\n           ^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/packaging/version.py", line 198, in __init__\n    raise InvalidVersion(f"Invalid version: \'{version}\'")\n']}.
[D 2023-05-05 07:59:40.603 ServerApp.mamba_gator] Accepting token-authenticated connection from 127.0.0.1
[D 2023-05-05 07:59:40.604 ServerApp.mamba_gator] {'type': 'InvalidVersion', 'error': "Invalid version: '2022.02.02.gr3.9'", 'message': 'InvalidVersion("Invalid version: \'2022.02.02.gr3.9\'")', 'traceback': ['  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/handlers.py", line 96, in execute_task\n    result = await f(*args)\n             ^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/handlers.py", line 380, in update_available\n    answer = await env_manager.list_available()\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/envmanager.py", line 692, in list_available\n    packages = await current_loop.run_in_executor(None, format_packages, data)\n               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/concurrent/futures/thread.py", line 58, in run\n    result = self.fn(*self.args, **self.kwargs)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/mamba_gator/envmanager.py", line 662, in format_packages\n    version = parse(entry.get("version", ""))\n              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/packaging/version.py", line 52, in parse\n    return Version(version)\n           ^^^^^^^^^^^^^^^^\n', '  File "/Users/johnlarsson/mambaforge/envs/jupyter/lib/python3.11/site-packages/packaging/version.py", line 198, in __init__\n    raise InvalidVersion(f"Invalid version: \'{version}\'")\n']}
[E 2023-05-05 07:59:40.605 ServerApp.mamba_gator] {
      "Host": "localhost:8890",
      "Accept": "*/*",
      "Referer": "http://localhost:8890/lab",
      "User-Agent": "Mozilla/5.0 (Macintosh; Intel Mac OS X 10.15; rv:109.0) Gecko/20100101 Firefox/112.0"
    }
Browser Output 
Paste the output from your browser Javascript console here.

johnne avatar May 05 '23 06:05 johnne