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Conda verification error when installing krona on OSX

Open johnne opened this issue 4 years ago • 4 comments

I'm trying to install krona from conda but the installation fails on the Verifying transaction: step due to missing files specified in the manifest:

CondaVerificationError: The package for krona located at /Users/john/python/anaconda3/pkgs/krona-2.7.1-pl526_2 appears to be corrupted. The path 'opt/krona/lib/._KronaTools.pm' specified in the package manifest cannot be found.

CondaVerificationError: The package for krona located at /Users/john/python/anaconda3/pkgs/krona-2.7.1-pl526_2 appears to be corrupted. The path 'opt/krona/scripts/._accession2taxid.make' specified in the package manifest cannot be found.

I've tried installing on Linux systems (including from within a Linux Docker container on Mac) and then it works without issue. I've also tried conda clean --all before attempting again.

johnne avatar Mar 22 '20 14:03 johnne

I'm having the same issue. The specified files are in krona-2.7.1-pl526_2; however they do not start with "._" anymore.

Be careful using conda clean --all as it will remove all packages in your conda directory.

ReneKat avatar Apr 27 '20 22:04 ReneKat

Hi, Have a coworker with the same problem. The ._ files are integrated into the metadata of the APFS partition and the file deleted. The solution is to remove them from the archive. The project hasn't been updated in a long time. Will try change the conda recipe to remove the files. Keep it up, Lukas Jansen

Finesim97 avatar Jun 08 '20 16:06 Finesim97

Should now be fixed

Finesim97 avatar Jun 12 '20 08:06 Finesim97

Hi guys, sorry but I didn't understand if there's a fix or not (?)

gabmetabarcoder avatar Oct 11 '23 14:10 gabmetabarcoder