Krona
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Conda verification error when installing krona on OSX
I'm trying to install krona from conda but the installation fails on the Verifying transaction:
step due to missing files specified in the manifest:
CondaVerificationError: The package for krona located at /Users/john/python/anaconda3/pkgs/krona-2.7.1-pl526_2 appears to be corrupted. The path 'opt/krona/lib/._KronaTools.pm' specified in the package manifest cannot be found.
CondaVerificationError: The package for krona located at /Users/john/python/anaconda3/pkgs/krona-2.7.1-pl526_2 appears to be corrupted. The path 'opt/krona/scripts/._accession2taxid.make' specified in the package manifest cannot be found.
I've tried installing on Linux systems (including from within a Linux Docker container on Mac) and then it works without issue. I've also tried conda clean --all
before attempting again.
I'm having the same issue. The specified files are in krona-2.7.1-pl526_2; however they do not start with "._" anymore.
Be careful using conda clean --all
as it will remove all packages in your conda directory.
Hi,
Have a coworker with the same problem. The ._
files are integrated into the metadata of the APFS partition and the file deleted. The solution is to remove them from the archive. The project hasn't been updated in a long time. Will try change the conda recipe to remove the files.
Keep it up,
Lukas Jansen
Should now be fixed
Hi guys, sorry but I didn't understand if there's a fix or not (?)