John Mayfield

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If you point me to your project I can make it work, likely you just need to use maven shade to assembly a unified view of the modules want.

So if we stay on Java 8 for now and just make sure packages aren't split that would be satisfactory, or at least make your use case work easier?

Handy commands to find the split packages: ``` $ find . -name '*.java' | sed 's|./||' | grep main | sed -e 's!/src/main/java/!\t!' | sed 's/\/[A-z0-9_]*.java//' | awk '{gsub("/",".",$2); print}'...

> Some methods, but not all, will certainly generate DeepSMILES which cannot be decoded > to SMILES. It would be nice if the implementation is robust to those. > Crashing...

Check the target/ directory

That .m2/repositories should not really be accessed

In the first case you have a PO3H vs PO3- in the second. It can't use that H if it didn't exist.... Also when you say completely different, the input...

Likely the SMILES is normalised to physiological pH, e.g. -CO2H => -CO2–