Jermiah Joseph

@johanneskoester is this feature something that might be feasible to immplement in the new release?

nice work @cademirch glad to see this going. If theres a new logging call it might be useful to consider specific logs that might provide more/structured info regarding mapping to...

that sounds about right, this is directly related to the logging itself. It might help to think about how the logs might be used. I for one, was first interested...

Hi @raymond126 thanks for this. To start, can you please update your PharmacoGx from Github, there have been some developments since the biocondunctor release ```R remotes::install_github( "bhklab/PharmacoGx", build_manual=TRUE, build_vignettes=TRUE )...

@raymond126 let me know if these worked with the new psets

@SWKoreaBME our `development` branch has been updated now, could you please try the new `imgtools index` cli entry point and let me know if it still errors out?

https://github.com/bhklab/med-imagetools/blob/864f7567423ed54911acbe5f8e9b2016f5189fef/src/imgtools/io/sample_input.py#L281-L285

https://github.com/bhklab/med-imagetools/blob/205b0dc6d5381234432e22f8ed1ed0a1bf0c84e5/src/imgtools/modules/datagraph.py#L586-L589 @skim2257 is it still the case that we dont want to create an edge between studies?

kewei has data from PDAC, data that works with corrected functions: - loglogisticregression - auc compute - hill fit (bi-phasic and mono-phasic) - DSS

@fedorov thank you very much for the detailed reply! We are currently working on a full refactor of the package and are prioritizing improved documentation and user-facing tutorials which will...